Couplage simple entre système d'information géographique et modèle multi-agents pour simuler l’impact des politiques publiques sur les dynamiques du paysage

Cet article traite l'aspect technique d'un couplage simple entre un système d'information géographique et un système multi-agents. Pour situer le contexte, nous faisons le point sur les données disponibles et le projet afin de comprendre pourquoi vouloir utiliser un fond cadastral dans un système de simulation. Ensuite nous abordons la réalité du couplage à travers la phase d'initialisation du modèle multi-agents, en prenant quelques exemples de traitements spécifiques tels que le voisinage des entités spatiales élémentaires.

Concert recording 2016-04-09a

[Track 01]. Horn concerto no. 1. Allegro / Richard Strauss -- [Track 02]. Fantasy for horn / Malcolm Arnold -- [Track 03]. Horn concerto no. 4. Allegro moderato ; [Track 04]. Andante ; [Track 05]. Allegro vivace / Wolfgang Amadeus Mozart

Motor unit firing pattern, synchrony and coherence in a deafferented patient

International audienceThe firing of spinal motoneurons (MNs) is controlled continuously by inputs from muscle, joint and skin receptors. Besides altering MN synaptic drive, the removal of these inputs is liable to alter the synaptic noise and, thus, the variability of their tonic activity. Sensory afferents, which are a major source of common and/or synchronized inputs shared by several MNs, may also contribute to the coupling in the time and frequency domains (synchrony and coherence, respectively) observed when cross-correlation and coherence analyses are applied to the discharges of MN pairs. Surprisingly, no consistent changes in firing frequency, nor in synchrony and coherence were reported to affect the activity of 3 pairs of motor units (MUs) tested in a case of sensory polyradiculoneuropathy (SPRNP), leading to an irreversible loss of large diameter sensory afferents (Farmer et al., 1993). Such a limited sample, however, precludes a definite conclusion about the actual impact that a chronic loss of muscle and cutaneous afferents may have on the firing properties of human MUs. To address this issue, the firing pattern of 92 MU pairs was analyzed at low contraction force in a case of SPRNP leading similarly to a permanent loss of proprioceptive inputs. Compared with 8 control subjects, MNs in this patient tended to discharge with slightly shorter inter-spike intervals but with greater variability. Synchronous firing tended to occur more frequently with a tighter coupling in the patient. There was no consistent change in coherence in the 15–30 Hz frequency range attributed to the MN corticospinal drive, but a greater coherence was observed below 5 Hz and between 30 and 60 Hz in the patient. The possible origins of the greater irregularity in MN tonic discharges, the tighter coupling of the synchronous firing and the changes in coherence observed in the absence of proprioceptive inputs are discussed

The Effect of Olanzapine on Craving and Alcohol Consumption

Previous studies have indicated that olanzapine decreases craving after a priming dose of alcohol, that craving after a priming dose of alcohol is greater among individuals with the seven-repeat allele of the DRD4 variable number of tandem repeats (VNTR) polymorphism, and that the effect of olanzapine (a D2/D4 antagonist) is more pronounced among individuals with this allele. The present study tested the hypothesis that olanzapine may be differentially effective at reducing cue-elicited craving and differentially effective as a treatment for alcohol dependence over the course of a 12-week, randomized, placebo-controlled trial among individuals with and without the seven-repeat allele. Participants who met DSM IV criteria for alcohol dependence were randomly assigned to receive olanzapine (5 mg) or a placebo over the course of the trial. After 2 weeks of treatment, participants completed a cue reactivity assessment. The results suggested that participants who were homozygous or heterozygous for the seven (or longer)-repeat allele of the DRD4 VNTR responded to olanzapine with reductions in cue-elicited craving as well as reductions in alcohol consumption over the course of the 12-week trial, whereas individuals with the shorter alleles did not respond favorably to olanzapine

Non-stationary Gaussian Process Surrogates

We provide a survey of non-stationary surrogate models which utilize Gaussian processes (GPs) or variations thereof, including non-stationary kernel adaptations, partition and local GPs, and spatial warpings through deep Gaussian processes. We also overview publicly available software implementations and conclude with a bake-off involving an 8-dimensional satellite drag computer experiment. Code for this example is provided in a public git repository.Comment: 13 pages, 5 figure

Status and potential of bacterial genomics for public health practice : a scoping review

Background: Next-generation sequencing (NGS) is increasingly being translated into routine public health practice, affecting the surveillance and control of many pathogens. The purpose of this scoping review is to identify and characterize the recent literature concerning the application of bacterial pathogen genomics for public health practice and to assess the added value, challenges, and needs related to its implementation from an epidemiologist’s perspective. Methods: In this scoping review, a systematic PubMed search with forward and backward snowballing was performed to identify manuscripts in English published between January 2015 and September 2018. Included studies had to describe the application of NGS on bacterial isolates within a public health setting. The studied pathogen, year of publication, country, number of isolates, sampling fraction, setting, public health application, study aim, level of implementation, time orientation of the NGS analyses, and key findings were extracted from each study. Due to a large heterogeneity of settings, applications, pathogens, and study measurements, a descriptive narrative synthesis of the eligible studies was performed. Results: Out of the 275 included articles, 164 were outbreak investigations, 70 focused on strategy-oriented surveillance, and 41 on control-oriented surveillance. Main applications included the use of whole-genome sequencing (WGS) data for (1) source tracing, (2) early outbreak detection, (3) unraveling transmission dynamics, (4) monitoring drug resistance, (5) detecting cross-border transmission events, (6) identifying the emergence of strains with enhanced virulence or zoonotic potential, and (7) assessing the impact of prevention and control programs. The superior resolution over conventional typing methods to infer transmission routes was reported as an added value, as well as the ability to simultaneously characterize the resistome and virulome of the studied pathogen. However, the full potential of pathogen genomics can only be reached through its integration with high-quality contextual data. Conclusions: For several pathogens, it is time for a shift from proof-of-concept studies to routine use of WGS during outbreak investigations and surveillance activities. However, some implementation challenges from the epidemiologist’s perspective remain, such as data integration, quality of contextual data, sampling strategies, and meaningful interpretations. Interdisciplinary, inter-sectoral, and international collaborations are key for an appropriate genomics-informed surveillance

Phylogeny of Poa (Poaceae) Based on trnT–trnF Sequence Data: Major Clades and Basal Relationships

Poa, the largest genus of grasses (Poaceae) with over 500 species, occurs throughout temperate and boreal regions in both hemispheres. A phylogenetic study of Poa based on trnT–trnF chloroplast DNA sequence data is presented focusing on basal relationships, major clades, generic boundaries, and placement of putatively closely related genera. Results support the monophyly of the main lineage of Poa if subgen. Andinae is excluded and Anthochloa, Austrofestuca, Dissanthelium (at least in part), and Eremopoa are included. The main Poa clade and subgen. Andinae resolve within a strongly supported Poinae–Alopecurinae–Miliinae clade (PAM). The subdivision of Poa into five major clades, proposed based on chloroplast restriction site data, is supported by sequence data. The basal-most clade (ArcSyl) comprises Poa subgen. Arctopoa and subgen. Poa sect. Sylvestres, two groups having disparate morphology, but similar cpDNA. The next-diverging clade (BAPO), comprising sects. Bolbophorum, Alpinae, Parodiochloa, and Ochlopoa, is strongly supported and characterized by highly divergent cpDNA. The majority of Poa species and sections form a strongly supported clade comprising major clades SPOSTA, PoM, and HAMBADD. Newly reported in this study is Eremopoa as a distinct lineage positioned between this higher Poa clade and BAPO. A revised infrageneric classification of Poa comprising five subgenera is proposed. Two new subgeneric divisions of Poa are proposed: subgen. Stenopoa for the SPOSTA clade and supersect. Homalopoa for the HAMBADD clade. The monotypic genus Anthochloa is reduced to Poa sect. Anthochloa, and its one species recognized as Poa lepidula